About rPredictor

Statistics
The rDB contains 592.514 structures
Last update: 21.6.2015
Last Mirrored SILVA release: 119

rPredictor is a bioinformatic infrastructure for prediction, analysis and storage of secondary structures of ribosomal RNAs. It includes a ribosomal RNA (rRNA) structure prediction engine based on the cppredict algorithm, a database of rRNA secondary structures and rRNA structure analysis tools accessible through this website.

The SILVA database is the source of primary structures (sequences). Licensing information to SILVA data can be found here: http://www.arb-silva.de/silva-license-information/.

The complete documentation including a tutorial is available from a separate documentation page.

rPredictor is a joint project of the Laboratory of Bioinformatics of the Institute of Microbiology Academy of Sciences of the Czech Republic and the Faculty of Mathematics and Physics at Charles University in Prague, implemented at the Faculty of Mathematics and Physics at Charles University in Prague.

Citation

Josef Pánek, Jan Hajič jr., David Hoksza (2014) Template-Based Prediction of Ribosomal RNA Secondary Structure, IEEE International Conference on Bioinformatics and Biomedicine (BIBM), Belfast, UK, pp.: 18-20, IEEE

Funding

This project is supported by grant no. 550214 of the Charles University Grant Agency and grant no. 15-00885S of the Grant Agency of the Czech Republic.
The project is a part of the ELIXIR CZ, Czech national node of the ELIXIR, pan-European research infrastructure for biological information.

The project is being developed at the Faculty of Mathematics and Physics of Charles University in Prague. The project is being developed at the Laboratory of bioinformatics of the Microbiology Institute AVČR. The project is part of the ELIXIR infrastructure.