About rPredictor

Statistics
The rDB contains 5149 structures
Last update: 12.12.2018
Mirrored SILVA release: 132
Mirrored Rfam release: 14.0
Used ENA release: 136
NCBI Taxonomy from: 24.10.2018

rPredictor is a bioinformatic infrastructure for prediction, analysis and storage of secondary structures of RNAs. It includes a RNA structure prediction engine based on the cppredict algorithm, a database of RNA secondary structures and RNA structure analysis tools accessible through this website.

Citation

Pánek J, Modrák M, Schwarz M: An Algorithm for Template-Based Prediction of Secondary Structures of Individual RNA Sequences.Front. Genet., 10 October 2017 | https://doi.org/10.3389/fgene.2017.00147

Elias R, Hoksza D: TRAVeLer: a tool for template-based RNA secondary structure visualization.BMC Bioinformatics. 2017 Nov 15;18(1):487. doi: 10.1186/s12859-017-1885-4.

The project is being developed at the Faculty of Mathematics and Physics of Charles University in Prague. The project is being developed at the Laboratory of bioinformatics of the Microbiology Institute AVČR. The project is part of the ELIXIR infrastructure.